J3_6O3M_056

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6O3M|1|QA|C|48, 6O3M|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_056 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0869

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6O3M|1|QA|G|46
6O3M|1|QA|C|47
6O3M|1|QA|C|48
6O3M|1|QA|U|49
6O3M|1|QA|A|50
6O3M|1|QA|A|51
6O3M|1|QA|G|52
*
6O3M|1|QA|U|359
6O3M|1|QA|A|360
6O3M|1|QA|G|361
6O3M|1|QA|G|362
6O3M|1|QA|A|363
6O3M|1|QA|A|364
6O3M|1|QA|U|365
6O3M|1|QA|C|366
6O3M|1|QA|U|367
*
6O3M|1|QA|A|393
6O3M|1|QA|G|394
6O3M|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9