J3_6O8W_018
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6O8W|1|a|A|974, 6O8W|1|a|A|975, 6O8W|1|a|A|991, 6O8W|1|a|G|992, 6O8W|1|a|U|1239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8W_018 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.4436
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6O8W|1|a|U|971
6O8W|1|a|U|972
6O8W|1|a|U|973
6O8W|1|a|A|974
6O8W|1|a|A|975
6O8W|1|a|U|976
6O8W|1|a|U|977
6O8W|1|a|C|978
*
6O8W|1|a|G|989
6O8W|1|a|A|990
6O8W|1|a|A|991
6O8W|1|a|G|992
6O8W|1|a|A|993
6O8W|1|a|A|994
6O8W|1|a|C|995
6O8W|1|a|C|996
6O8W|1|a|U|997
6O8W|1|a|U|998
6O8W|1|a|A|999
6O8W|1|a|C|1000
*
6O8W|1|a|G|1236
6O8W|1|a|G|1237
6O8W|1|a|C|1238
6O8W|1|a|U|1239
6O8W|1|a|A|1240
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: