J3_6O8W_030
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8W_030 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.1696
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6O8W|1|a|C|952
6O8W|1|a|A|953
6O8W|1|a|A|954
6O8W|1|a|G|955
*
6O8W|1|a|C|1359
6O8W|1|a|U|1360
6O8W|1|a|A|1361
6O8W|1|a|G|1362
6O8W|1|a|U|1363
6O8W|1|a|A|1364
6O8W|1|a|A|1365
*
6O8W|1|a|U|1387
6O8W|1|a|G|1388
6O8W|1|a|A|1389
6O8W|1|a|A|1390
6O8W|1|a|U|1391
6O8W|1|a|A|1392
6O8W|1|a|C|1393
6O8W|1|a|G|1394
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
Coloring options: