J3_6O8X_006

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGUAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_006 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1954

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6O8X|1|A|C|1334
6O8X|1|A|G|1335
6O8X|1|A|U|1336
6O8X|1|A|A|1337
6O8X|1|A|U|1338
6O8X|1|A|G|1339
*
6O8X|1|A|C|1668
6O8X|1|A|G|1669
6O8X|1|A|A|1670
*
6O8X|1|A|U|1682
6O8X|1|A|A|1683
6O8X|1|A|A|1684
6O8X|1|A|G|1685

Current chains

Chain A

23S rRNA

Nearby chains