J3_6O8X_026

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_026 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1269

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6O8X|1|A|G|1466
6O8X|1|A|G|1467
6O8X|1|A|G|1468
6O8X|1|A|A|1469
6O8X|1|A|C|1470
6O8X|1|A|G|1471
*
6O8X|1|A|C|1610
6O8X|1|A|C|1611
*
6O8X|1|A|G|1614
6O8X|1|A|A|1615
6O8X|1|A|A|1616
6O8X|1|A|A|1617
6O8X|1|A|A|1618
6O8X|1|A|G|1619
6O8X|1|A|C|1620

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2