J3_6O8X_028

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6O8X|1|a|C|45, 6O8X|1|a|A|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_028 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1367

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6O8X|1|a|G|43
6O8X|1|a|C|44
6O8X|1|a|C|45
6O8X|1|a|U|46
6O8X|1|a|A|47
6O8X|1|a|A|48
6O8X|1|a|U|49
*
6O8X|1|a|A|374
6O8X|1|a|G|375
6O8X|1|a|G|376
6O8X|1|a|G|377
6O8X|1|a|A|378
6O8X|1|a|A|379
6O8X|1|a|U|380
6O8X|1|a|C|381
6O8X|1|a|U|382
*
6O8X|1|a|A|408
6O8X|1|a|G|409
6O8X|1|a|C|410

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16