J3_6O8X_035

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

6O8X|1|A|C|1381, 6O8X|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_035 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1559

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6O8X|1|A|U|1380
6O8X|1|A|C|1381
6O8X|1|A|G|1382
6O8X|1|A|G|1383
6O8X|1|A|G|1384
6O8X|1|A|A|1385
6O8X|1|A|C|1386
*
6O8X|1|A|G|1417
6O8X|1|A|A|1418
6O8X|1|A|C|1419
6O8X|1|A|A|1420
6O8X|1|A|A|1421
*
6O8X|1|A|U|1438
6O8X|1|A|A|1439

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23