J3_6O8Z_001

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1458

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6O8Z|1|A|G|31
6O8Z|1|A|C|32
*
6O8Z|1|A|G|514
6O8Z|1|A|U|515
6O8Z|1|A|G|516
6O8Z|1|A|A|517
6O8Z|1|A|A|518
6O8Z|1|A|A|519
6O8Z|1|A|A|520
6O8Z|1|A|G|521
*
6O8Z|1|A|C|548
6O8Z|1|A|C|549

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain V

50S ribosomal protein L24