J3_6O8Z_007

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUAAG*CGUAAAC*GUAG

Length

16 nucleotides

Bulged bases

6O8Z|1|A|U|1650, 6O8Z|1|A|A|1652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1252

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6O8Z|1|A|C|1341
6O8Z|1|A|U|1342
6O8Z|1|A|A|1343
6O8Z|1|A|A|1344
6O8Z|1|A|G|1345
*
6O8Z|1|A|C|1648
6O8Z|1|A|G|1649
6O8Z|1|A|U|1650
6O8Z|1|A|A|1651
6O8Z|1|A|A|1652
6O8Z|1|A|A|1653
6O8Z|1|A|C|1654
*
6O8Z|1|A|G|1663
6O8Z|1|A|U|1664
6O8Z|1|A|A|1665
6O8Z|1|A|G|1666

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34