J3_6O8Z_010

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6O8Z|1|A|A|2532, 6O8Z|1|A|U|2533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1407

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6O8Z|1|A|C|2531
6O8Z|1|A|A|2532
6O8Z|1|A|U|2533
6O8Z|1|A|C|2534
*
6O8Z|1|A|G|2559
6O8Z|1|A|U|2560
6O8Z|1|A|U|2561
*
6O8Z|1|A|A|2575
6O8Z|1|A|U|2576
6O8Z|1|A|U|2577
6O8Z|1|A|A|2578
6O8Z|1|A|A|2579
6O8Z|1|A|A|2580
6O8Z|1|A|G|2581

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14