J3_6O8Z_019

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_019 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1888

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6O8Z|1|a|C|1006
6O8Z|1|a|U|1007
6O8Z|1|a|U|1008
6O8Z|1|a|G|1009
*
6O8Z|1|a|C|1061
6O8Z|1|a|A|1062
6O8Z|1|a|G|1063
*
6O8Z|1|a|C|1225
6O8Z|1|a|U|1226
6O8Z|1|a|U|1227
6O8Z|1|a|A|1228
6O8Z|1|a|U|1229
6O8Z|1|a|G|1230

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z