J3_6O8Z_023
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 6O8Z|1|a|U|1255, 6O8Z|1|a|U|1317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8Z_023 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1749
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
6O8Z|1|a|C|1252
6O8Z|1|a|A|1253
6O8Z|1|a|A|1254
6O8Z|1|a|U|1255
6O8Z|1|a|G|1256
*
6O8Z|1|a|C|1311
6O8Z|1|a|U|1312
6O8Z|1|a|C|1313
6O8Z|1|a|A|1314
6O8Z|1|a|G|1315
6O8Z|1|a|U|1316
6O8Z|1|a|U|1317
6O8Z|1|a|C|1318
*
6O8Z|1|a|G|1349
6O8Z|1|a|C|1350
6O8Z|1|a|C|1351
6O8Z|1|a|G|1352
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: