J3_6O8Z_035

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_035 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2197

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6O8Z|1|a|U|1089
6O8Z|1|a|G|1090
*
6O8Z|1|a|U|1099
6O8Z|1|a|G|1100
6O8Z|1|a|U|1101
6O8Z|1|a|U|1102
*
6O8Z|1|a|G|1115
6O8Z|1|a|C|1116
6O8Z|1|a|A|1117
6O8Z|1|a|A|1118

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5