J3_6O90_021

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O90_021 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2328

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6O90|1|a|U|1089
6O90|1|a|G|1090
*
6O90|1|a|U|1099
6O90|1|a|G|1100
6O90|1|a|U|1101
6O90|1|a|U|1102
6O90|1|a|G|1103
*
6O90|1|a|C|1114
6O90|1|a|G|1115
6O90|1|a|C|1116
6O90|1|a|A|1117
6O90|1|a|A|1118

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5