J3_6O90_026

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGAAG*CGCUAAAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6O90|1|A|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O90_026 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1316

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6O90|1|A|U|334
6O90|1|A|G|335
6O90|1|A|A|336
6O90|1|A|A|337
6O90|1|A|G|338
*
6O90|1|A|C|353
6O90|1|A|G|354
6O90|1|A|C|355
6O90|1|A|U|356
6O90|1|A|A|357
6O90|1|A|A|358
6O90|1|A|A|359
6O90|1|A|G|360
6O90|1|A|A|361
6O90|1|A|G|362
*
6O90|1|A|C|374
6O90|1|A|G|375
6O90|1|A|U|376
6O90|1|A|A|377
6O90|1|A|G|378

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24