J3_6O90_038

3D structure

PDB id

6O90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

6O90|1|a|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O90_038 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1911

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6O90|1|a|U|1132
6O90|1|a|A|1133
6O90|1|a|U|1134
*
6O90|1|a|A|1170
6O90|1|a|G|1171
6O90|1|a|A|1172
6O90|1|a|C|1173
6O90|1|a|U|1174
6O90|1|a|G|1175
6O90|1|a|C|1176
*
6O90|1|a|G|1190
6O90|1|a|A|1191
6O90|1|a|G|1192
6O90|1|a|G|1193
6O90|1|a|A|1194
6O90|1|a|A|1195
6O90|1|a|G|1196
6O90|1|a|G|1197
6O90|1|a|U|1198
6O90|1|a|G|1199

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain n

30S ribosomal protein S14 type Z