J3_6O97_009

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O97_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0572

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6O97|1|1A|G|1344
6O97|1|1A|C|1345
6O97|1|1A|G|1346
6O97|1|1A|G|1347
6O97|1|1A|G|1348
6O97|1|1A|A|1349
6O97|1|1A|C|1350
*
6O97|1|1A|G|1381
6O97|1|1A|G|1382
6O97|1|1A|C|1383
6O97|1|1A|A|1384
6O97|1|1A|G|1385
*
6O97|1|1A|C|1402
6O97|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23