3D structure

PDB id
6O97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
CGUAAG*CGG*UCAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O97_034 not in the Motif Atlas
Homologous match to J3_7RQB_007
Geometric discrepancy: 0.0801
The information below is about J3_7RQB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.3
Basepair signature
cWW-tSH-tHW-F-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6O97|1|2A|C|1298
6O97|1|2A|G|1299
6O97|1|2A|U|1300
6O97|1|2A|A|1301
6O97|1|2A|A|1302
6O97|1|2A|G|1303
*
6O97|1|2A|C|1625
6O97|1|2A|G|1626
6O97|1|2A|G|1627
*
6O97|1|2A|U|1639
6O97|1|2A|C|1640
6O97|1|2A|A|1641
6O97|1|2A|G|1642

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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