3D structure

PDB id
6O97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
6O97|1|2a|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O97_071 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.1086
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6O97|1|2a|C|586
6O97|1|2a|G|587
6O97|1|2a|G|588
*
6O97|1|2a|C|651
6O97|1|2a|U|652
6O97|1|2a|A|653
6O97|1|2a|G|654
6O97|1|2a|A|655
*
6O97|1|2a|U|751
6O97|1|2a|G|752
6O97|1|2a|A|753
6O97|1|2a|C|754
6O97|1|2a|G|755

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2h
30S ribosomal protein S8
Chain 2l
30S ribosomal protein S12
Chain 2o
30S ribosomal protein S15
Chain 2q
30S ribosomal protein S17

Coloring options:


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