J3_6O9K_030

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9K_030 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5424

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6O9K|1|A|U|1344
6O9K|1|A|C|1345
6O9K|1|A|G|1346
6O9K|1|A|A|1347
6O9K|1|A|C|1348
6O9K|1|A|C|1349
6O9K|1|A|C|1350
*
6O9K|1|A|G|1381
6O9K|1|A|G|1382
6O9K|1|A|A|1383
6O9K|1|A|A|1384
6O9K|1|A|A|1385
*
6O9K|1|A|U|1402
6O9K|1|A|A|1403

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23