J3_6OF1_069

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6OF1|1|2a|C|48, 6OF1|1|2a|A|50, 6OF1|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF1_069 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0915

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OF1|1|2a|G|46
6OF1|1|2a|C|47
6OF1|1|2a|C|48
6OF1|1|2a|U|49
6OF1|1|2a|A|50
6OF1|1|2a|A|51
6OF1|1|2a|G|52
*
6OF1|1|2a|U|359
6OF1|1|2a|A|360
6OF1|1|2a|G|361
6OF1|1|2a|G|362
6OF1|1|2a|A|363
6OF1|1|2a|A|364
6OF1|1|2a|U|365
6OF1|1|2a|C|366
6OF1|1|2a|U|367
*
6OF1|1|2a|A|393
6OF1|1|2a|G|394
6OF1|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16