3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
6OF6|1|QA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1045
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OF6|1|QA|U|672
6OF6|1|QA|G|673
*
6OF6|1|QA|C|717
6OF6|1|QA|G|718
6OF6|1|QA|C|719
6OF6|1|QA|C|720
6OF6|1|QA|G|721
6OF6|1|QA|A|722
6OF6|1|QA|U|723
6OF6|1|QA|G|724
6OF6|1|QA|G|725
*
6OF6|1|QA|C|732
6OF6|1|QA|A|733
6OF6|1|QA|G|734

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QF
30S ribosomal protein S6
Chain QK
30S ribosomal protein S11
Chain QO
30S ribosomal protein S15
Chain QR
30S ribosomal protein S18
Chain QX
mRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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