J3_6OF6_005

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF6_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1363

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6OF6|1|QA|C|936
6OF6|1|QA|A|937
6OF6|1|QA|A|938
6OF6|1|QA|G|939
*
6OF6|1|QA|C|1344
6OF6|1|QA|U|1345
6OF6|1|QA|A|1346
6OF6|1|QA|G|1347
6OF6|1|QA|U|1348
6OF6|1|QA|A|1349
6OF6|1|QA|A|1350
*
6OF6|1|QA|U|1372
6OF6|1|QA|G|1373
6OF6|1|QA|A|1374
6OF6|1|QA|A|1375
6OF6|1|QA|U|1376
6OF6|1|QA|A|1377
6OF6|1|QA|C|1378
6OF6|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QW

Transfer RNA; tRNA