3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_010 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1048
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6OF6|1|QA|C|1063
6OF6|1|QA|G|1064
6OF6|1|QA|U|1065
6OF6|1|QA|C|1066
6OF6|1|QA|A|1067
6OF6|1|QA|G|1068
*
6OF6|1|QA|C|1107
6OF6|1|QA|G|1108
6OF6|1|QA|C|1109
6OF6|1|QA|A|1110
6OF6|1|QA|A|1111
6OF6|1|QA|C|1112
6OF6|1|QA|C|1113
*
6OF6|1|QA|G|1187
6OF6|1|QA|A|1188
6OF6|1|QA|C|1189
6OF6|1|QA|G|1190
6OF6|1|QA|A|1191
6OF6|1|QA|C|1192
6OF6|1|QA|G|1193

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QC
30S ribosomal protein S3
Chain QE
30S ribosomal protein S5
Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QN
30S ribosomal protein S14 type Z

Coloring options:


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