J3_6OF6_022

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6OF6|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF6_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1225

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OF6|1|RA|G|1344
6OF6|1|RA|C|1345
6OF6|1|RA|G|1346
6OF6|1|RA|G|1347
6OF6|1|RA|G|1348
6OF6|1|RA|A|1349
6OF6|1|RA|C|1350
*
6OF6|1|RA|G|1381
6OF6|1|RA|G|1382
6OF6|1|RA|C|1383
6OF6|1|RA|A|1384
6OF6|1|RA|G|1385
*
6OF6|1|RA|C|1402
6OF6|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34