3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
6OF6|1|RA|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_022 not in the Motif Atlas
Homologous match to J3_7RQB_009
Geometric discrepancy: 0.1225
The information below is about J3_7RQB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04858.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

6OF6|1|RA|G|1344
6OF6|1|RA|C|1345
6OF6|1|RA|G|1346
6OF6|1|RA|G|1347
6OF6|1|RA|G|1348
6OF6|1|RA|A|1349
6OF6|1|RA|C|1350
*
6OF6|1|RA|G|1381
6OF6|1|RA|G|1382
6OF6|1|RA|C|1383
6OF6|1|RA|A|1384
6OF6|1|RA|G|1385
*
6OF6|1|RA|C|1402
6OF6|1|RA|C|1403

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34

Coloring options:


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