J3_6OF6_048

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF6_048 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0671

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6OF6|1|YA|C|1298
6OF6|1|YA|G|1299
6OF6|1|YA|U|1300
6OF6|1|YA|A|1301
6OF6|1|YA|A|1302
6OF6|1|YA|G|1303
*
6OF6|1|YA|C|1625
6OF6|1|YA|G|1626
6OF6|1|YA|G|1627
*
6OF6|1|YA|U|1639
6OF6|1|YA|C|1640
6OF6|1|YA|A|1641
6OF6|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains