3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
6OF6|1|YA|A|2518, 6OF6|1|YA|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_053 not in the Motif Atlas
Homologous match to J3_7RQB_012
Geometric discrepancy: 0.0768
The information below is about J3_7RQB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.3
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

6OF6|1|YA|C|2517
6OF6|1|YA|A|2518
6OF6|1|YA|U|2519
6OF6|1|YA|C|2520
*
6OF6|1|YA|G|2545
6OF6|1|YA|U|2546
6OF6|1|YA|U|2547
*
6OF6|1|YA|A|2561
6OF6|1|YA|U|2562
6OF6|1|YA|U|2563
6OF6|1|YA|A|2564
6OF6|1|YA|A|2565
6OF6|1|YA|A|2566
6OF6|1|YA|G|2567

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YO
50S ribosomal protein L14

Coloring options:


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