J3_6OF6_057
3D structure
- PDB id
- 6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6OF6|1|QA|C|48, 6OF6|1|QA|A|50, 6OF6|1|QA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OF6_057 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0698
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OF6|1|QA|G|46
6OF6|1|QA|C|47
6OF6|1|QA|C|48
6OF6|1|QA|U|49
6OF6|1|QA|A|50
6OF6|1|QA|A|51
6OF6|1|QA|G|52
*
6OF6|1|QA|U|359
6OF6|1|QA|A|360
6OF6|1|QA|G|361
6OF6|1|QA|G|362
6OF6|1|QA|A|363
6OF6|1|QA|A|364
6OF6|1|QA|U|365
6OF6|1|QA|C|366
6OF6|1|QA|U|367
*
6OF6|1|QA|A|393
6OF6|1|QA|G|394
6OF6|1|QA|C|395
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QL
- 30S ribosomal protein S12
- Chain QP
- 30S ribosomal protein S16
- Chain YI
- 50S ribosomal protein L9
Coloring options: