J3_6OFX_001

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OFX_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0985

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6OFX|1|1|G|30
6OFX|1|1|C|31
*
6OFX|1|1|G|474
6OFX|1|1|C|475
6OFX|1|1|G|476
6OFX|1|1|A|477
6OFX|1|1|A|478
6OFX|1|1|A|479
6OFX|1|1|A|480
6OFX|1|1|G|481
*
6OFX|1|1|C|509
6OFX|1|1|C|510

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24