J3_6OFX_003

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OFX|1|1|U|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OFX_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3491

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OFX|1|1|U|683
6OFX|1|1|G|684
6OFX|1|1|A|685
6OFX|1|1|U|686
6OFX|1|1|C|687
6OFX|1|1|U|688
6OFX|1|1|A|689
*
6OFX|1|1|U|773
6OFX|1|1|G|774
6OFX|1|1|G|775
*
6OFX|1|1|C|791
6OFX|1|1|A|792
6OFX|1|1|A|793
6OFX|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2