J3_6OGF_003

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OGF|1|1|U|686, 6OGF|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3714

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OGF|1|1|U|683
6OGF|1|1|G|684
6OGF|1|1|A|685
6OGF|1|1|U|686
6OGF|1|1|C|687
6OGF|1|1|U|688
6OGF|1|1|A|689
*
6OGF|1|1|U|773
6OGF|1|1|G|774
6OGF|1|1|G|775
*
6OGF|1|1|C|791
6OGF|1|1|A|792
6OGF|1|1|A|793
6OGF|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2