3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGG_004 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.1824
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6OGG|1|1|C|698
6OGG|1|1|A|699
6OGG|1|1|G|700
*
6OGG|1|1|C|732
6OGG|1|1|G|733
6OGG|1|1|A|734
6OGG|1|1|A|735
6OGG|1|1|C|736
*
6OGG|1|1|G|760
6OGG|1|1|A|761
6OGG|1|1|U|762
6OGG|1|1|G|763

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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