3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUAAUC*GAGGUUAG*CAUAAG
Length
20 nucleotides
Bulged bases
6OGG|1|1|U|2334, 6OGG|1|1|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGG|1|1|C|2295
6OGG|1|1|U|2296
6OGG|1|1|A|2297
6OGG|1|1|A|2298
6OGG|1|1|U|2299
6OGG|1|1|C|2300
*
6OGG|1|1|G|2316
6OGG|1|1|A|2317
6OGG|1|1|G|2318
6OGG|1|1|G|2319
6OGG|1|1|U|2320
6OGG|1|1|U|2321
6OGG|1|1|A|2322
6OGG|1|1|G|2323
*
6OGG|1|1|C|2332
6OGG|1|1|A|2333
6OGG|1|1|U|2334
6OGG|1|1|A|2335
6OGG|1|1|A|2336
6OGG|1|1|G|2337

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain e
50S ribosomal protein L5
Chain o
50S ribosomal protein L18
Chain w
50S ribosomal protein L27

Coloring options:

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