J3_6OGG_027

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OGG|1|1|U|321, 6OGG|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGG_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.233

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OGG|1|1|G|297
6OGG|1|1|G|298
6OGG|1|1|A|299
6OGG|1|1|A|300
6OGG|1|1|G|301
*
6OGG|1|1|C|316
6OGG|1|1|G|317
6OGG|1|1|C|318
6OGG|1|1|G|319
6OGG|1|1|A|320
6OGG|1|1|U|321
6OGG|1|1|A|322
6OGG|1|1|C|323
6OGG|1|1|A|324
6OGG|1|1|G|325
*
6OGG|1|1|C|337
6OGG|1|1|G|338
6OGG|1|1|U|339
6OGG|1|1|A|340
6OGG|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24