J3_6OGI_004

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGI_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0844

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6OGI|1|1|C|698
6OGI|1|1|A|699
6OGI|1|1|G|700
*
6OGI|1|1|C|732
6OGI|1|1|G|733
6OGI|1|1|A|734
6OGI|1|1|A|735
6OGI|1|1|C|736
*
6OGI|1|1|G|760
6OGI|1|1|A|761
6OGI|1|1|U|762
6OGI|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2