J3_6OGI_006
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OGI_006 not in the Motif Atlas
- Homologous match to J3_4WF9_004
- Geometric discrepancy: 0.1511
- The information below is about J3_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6OGI|1|1|C|1298
6OGI|1|1|G|1299
6OGI|1|1|G|1300
6OGI|1|1|A|1301
6OGI|1|1|A|1302
6OGI|1|1|G|1303
*
6OGI|1|1|C|1625
6OGI|1|1|A|1626
6OGI|1|1|G|1627
*
6OGI|1|1|C|1639
6OGI|1|1|A|1640
6OGI|1|1|A|1641
6OGI|1|1|G|1642
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: