3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGI_006 not in the Motif Atlas
Homologous match to J3_4WF9_004
Geometric discrepancy: 0.1511
The information below is about J3_4WF9_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6OGI|1|1|C|1298
6OGI|1|1|G|1299
6OGI|1|1|G|1300
6OGI|1|1|A|1301
6OGI|1|1|A|1302
6OGI|1|1|G|1303
*
6OGI|1|1|C|1625
6OGI|1|1|A|1626
6OGI|1|1|G|1627
*
6OGI|1|1|C|1639
6OGI|1|1|A|1640
6OGI|1|1|A|1641
6OGI|1|1|G|1642

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.189 s