J3_6OGI_008

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGI_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1295

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6OGI|1|1|U|1344
6OGI|1|1|C|1345
6OGI|1|1|G|1346
6OGI|1|1|A|1347
6OGI|1|1|C|1348
6OGI|1|1|C|1349
*
6OGI|1|1|G|1382
6OGI|1|1|A|1383
6OGI|1|1|A|1384
6OGI|1|1|A|1385
*
6OGI|1|1|U|1402
6OGI|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23