J3_6OGI_014

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGC*GGAAUAU*AGCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|G|45
6OGI|1|3|G|46
6OGI|1|3|C|47
*
6OGI|1|3|G|361
6OGI|1|3|G|362
6OGI|1|3|A|363
6OGI|1|3|A|364
6OGI|1|3|U|365
6OGI|1|3|A|366
6OGI|1|3|U|367
*
6OGI|1|3|A|393
6OGI|1|3|G|394
6OGI|1|3|C|395
6OGI|1|3|C|396

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16