J3_6OGI_018

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UGUUGGG*CCCGCAA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|U|1073
6OGI|1|3|G|1074
*
6OGI|1|3|U|1083
6OGI|1|3|G|1084
6OGI|1|3|U|1085
6OGI|1|3|U|1086
6OGI|1|3|G|1087
6OGI|1|3|G|1088
6OGI|1|3|G|1089
*
6OGI|1|3|C|1096
6OGI|1|3|C|1097
6OGI|1|3|C|1098
6OGI|1|3|G|1099
6OGI|1|3|C|1100
6OGI|1|3|A|1101
6OGI|1|3|A|1102

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain J

30S ribosomal protein S5

Chain Z

30S ribosomal protein S21