J3_6OGI_021

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OGI|1|1|U|321, 6OGI|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGI_021 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1574

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OGI|1|1|G|297
6OGI|1|1|G|298
6OGI|1|1|A|299
6OGI|1|1|A|300
6OGI|1|1|G|301
*
6OGI|1|1|C|316
6OGI|1|1|G|317
6OGI|1|1|C|318
6OGI|1|1|G|319
6OGI|1|1|A|320
6OGI|1|1|U|321
6OGI|1|1|A|322
6OGI|1|1|C|323
6OGI|1|1|A|324
6OGI|1|1|G|325
*
6OGI|1|1|C|337
6OGI|1|1|G|338
6OGI|1|1|U|339
6OGI|1|1|A|340
6OGI|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24