J3_6OGI_027

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGGU*GCUUGA*UGACGC

Length

17 nucleotides

Bulged bases

6OGI|1|3|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|G|585
6OGI|1|3|C|586
6OGI|1|3|G|587
6OGI|1|3|G|588
6OGI|1|3|U|589
*
6OGI|1|3|G|650
6OGI|1|3|C|651
6OGI|1|3|U|652
6OGI|1|3|U|653
6OGI|1|3|G|654
6OGI|1|3|A|655
*
6OGI|1|3|U|751
6OGI|1|3|G|752
6OGI|1|3|A|753
6OGI|1|3|C|754
6OGI|1|3|G|755
6OGI|1|3|C|756

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain Q

30S ribosomal protein S12

Chain T

30S ribosomal protein S15

Chain V

30S ribosomal protein S17