3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCCGCACAAG*CUAGUAA*UGAAUACGUUCCCGGG
Length
33 nucleotides
Bulged bases
6OGI|1|3|A|1346
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGI|1|3|C|930
6OGI|1|3|C|931
6OGI|1|3|C|932
6OGI|1|3|G|933
6OGI|1|3|C|934
6OGI|1|3|A|935
6OGI|1|3|C|936
6OGI|1|3|A|937
6OGI|1|3|A|938
6OGI|1|3|G|939
*
6OGI|1|3|C|1344
6OGI|1|3|U|1345
6OGI|1|3|A|1346
6OGI|1|3|G|1347
6OGI|1|3|U|1348
6OGI|1|3|A|1349
6OGI|1|3|A|1350
*
6OGI|1|3|U|1372
6OGI|1|3|G|1373
6OGI|1|3|A|1374
6OGI|1|3|A|1375
6OGI|1|3|U|1376
6OGI|1|3|A|1377
6OGI|1|3|C|1378
6OGI|1|3|G|1379
6OGI|1|3|U|1380
6OGI|1|3|U|1381
6OGI|1|3|C|1382
6OGI|1|3|C|1383
6OGI|1|3|C|1384
6OGI|1|3|G|1385
6OGI|1|3|G|1386
6OGI|1|3|G|1387

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 4
mRNA
Chain 5
Transfer RNA; tRNA
Chain J
30S ribosomal protein S5
Chain L
30S ribosomal protein S7
Chain N
30S ribosomal protein S9

Coloring options:

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