Loop J3_6OGI

3D structure

PDB id: 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CUGGUCUUGACAUCCAC*GUGAGACAGGUGCUGCAUGGCU*AGUCAUCAUGGCCCUUACGACCAG
Length: 63 nucleotides
Bulged bases: 6OGI|1|3|C|1054, 6OGI|1|3|U|1212, 6OGI|1|3|C|1214
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OGI|1|3|C|985
6OGI|1|3|U|986
6OGI|1|3|G|987
6OGI|1|3|G|988
6OGI|1|3|U|989
6OGI|1|3|C|990
6OGI|1|3|U|991
6OGI|1|3|U|992
6OGI|1|3|G|993
6OGI|1|3|A|994
6OGI|1|3|C|995
6OGI|1|3|A|996
6OGI|1|3|U|997
6OGI|1|3|C|998
6OGI|1|3|C|999
6OGI|1|3|A|1000
6OGI|1|3|C|1001
*
6OGI|1|3|G|1039
6OGI|1|3|U|1040
6OGI|1|3|G|1041
6OGI|1|3|A|1042
6OGI|1|3|G|1043
6OGI|1|3|A|1044
6OGI|1|3|C|1045
6OGI|1|3|A|1046
6OGI|1|3|G|1047
6OGI|1|3|G|1048
6OGI|1|3|U|1049
6OGI|1|3|G|1050
6OGI|1|3|C|1051
6OGI|1|3|U|1052
6OGI|1|3|G|1053
6OGI|1|3|C|1054
6OGI|1|3|A|1055
6OGI|1|3|U|1056
6OGI|1|3|G|1057
6OGI|1|3|G|1058
6OGI|1|3|C|1059
6OGI|1|3|U|1060
*
6OGI|1|3|A|1197
6OGI|1|3|G|1198
6OGI|1|3|U|1199
6OGI|1|3|C|1200
6OGI|1|3|A|1201
6OGI|1|3|U|1202
6OGI|1|3|C|1203
6OGI|1|3|A|1204
6OGI|1|3|U|1205
6OGI|1|3|G|1206
6OGI|1|3|G|1207
6OGI|1|3|C|1208
6OGI|1|3|C|1209
6OGI|1|3|C|1210
6OGI|1|3|U|1211
6OGI|1|3|U|1212
6OGI|1|3|A|1213
6OGI|1|3|C|1214
6OGI|1|3|G|1215
6OGI|1|3|A|1216
6OGI|1|3|C|1217
6OGI|1|3|C|1218
6OGI|1|3|A|1219
6OGI|1|3|G|1220

Current chains

Chain 3: 16S ribosomal RNA

Nearby chains

Chain 4: mRNA
Chain H: 30S ribosomal protein S3
Chain O: 30S ribosomal protein S10
Chain S: 30S ribosomal protein S14
Chain X: 30S ribosomal protein S19

J3_6OGI_031