3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UAUCCUUUG*CAAAGGAGACUGCC*GGAGGAAGGUG
Length
34 nucleotides
Bulged bases
6OGI|1|3|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGI|1|3|U|1116
6OGI|1|3|A|1117
6OGI|1|3|U|1118
6OGI|1|3|C|1119
6OGI|1|3|C|1120
6OGI|1|3|U|1121
6OGI|1|3|U|1122
6OGI|1|3|U|1123
6OGI|1|3|G|1124
*
6OGI|1|3|C|1149
6OGI|1|3|A|1150
6OGI|1|3|A|1151
6OGI|1|3|A|1152
6OGI|1|3|G|1153
6OGI|1|3|G|1154
6OGI|1|3|A|1155
6OGI|1|3|G|1156
6OGI|1|3|A|1157
6OGI|1|3|C|1158
6OGI|1|3|U|1159
6OGI|1|3|G|1160
6OGI|1|3|C|1161
6OGI|1|3|C|1162
*
6OGI|1|3|G|1174
6OGI|1|3|G|1175
6OGI|1|3|A|1176
6OGI|1|3|G|1177
6OGI|1|3|G|1178
6OGI|1|3|A|1179
6OGI|1|3|A|1180
6OGI|1|3|G|1181
6OGI|1|3|G|1182
6OGI|1|3|U|1183
6OGI|1|3|G|1184

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain L
30S ribosomal protein S7
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:

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