J3_6OIG_010

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACG*CGUAACU*AG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|C|1631
6OIG|1|5|A|1632
6OIG|1|5|C|1633
6OIG|1|5|G|1634
*
6OIG|1|5|C|1639
6OIG|1|5|G|1640
6OIG|1|5|U|1641
6OIG|1|5|A|1642
6OIG|1|5|A|1643
6OIG|1|5|C|1644
6OIG|1|5|U|1645
*
6OIG|1|5|A|1810
6OIG|1|5|G|1811

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A