J3_6OIG_015

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OIG_015 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.2313

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6OIG|1|5|C|3298
6OIG|1|5|A|3299
6OIG|1|5|U|3300
*
6OIG|1|5|A|3314
6OIG|1|5|G|3315
6OIG|1|5|A|3316
6OIG|1|5|U|3317
6OIG|1|5|G|3318
*
6OIG|1|5|C|3388
6OIG|1|5|U|3389
6OIG|1|5|G|3390

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A