J3_6OIG_020

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGAAAAG*CG*CUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|G|368
6OIG|1|5|A|369
6OIG|1|5|U|370
6OIG|1|5|G|371
6OIG|1|5|A|372
6OIG|1|5|A|373
6OIG|1|5|A|374
6OIG|1|5|A|375
6OIG|1|5|G|376
*
6OIG|1|5|C|403
6OIG|1|5|G|404
*
6OIG|1|8|C|19
6OIG|1|8|U|20
6OIG|1|8|C|21

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L39