J3_6OJ2_005

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1208

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6OJ2|1|QA|C|936
6OJ2|1|QA|A|937
6OJ2|1|QA|A|938
6OJ2|1|QA|G|939
*
6OJ2|1|QA|C|1344
6OJ2|1|QA|U|1345
6OJ2|1|QA|A|1346
6OJ2|1|QA|G|1347
6OJ2|1|QA|U|1348
6OJ2|1|QA|A|1349
6OJ2|1|QA|A|1350
*
6OJ2|1|QA|U|1372
6OJ2|1|QA|G|1373
6OJ2|1|QA|A|1374
6OJ2|1|QA|A|1375
6OJ2|1|QA|U|1376
6OJ2|1|QA|A|1377
6OJ2|1|QA|C|1378
6OJ2|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QW

Transfer RNA; tRNA