3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_010 not in the Motif Atlas
Geometric match to J3_4LFB_007
Geometric discrepancy: 0.1432
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6OJ2|1|QA|C|1063
6OJ2|1|QA|G|1064
6OJ2|1|QA|U|1065
6OJ2|1|QA|C|1066
6OJ2|1|QA|A|1067
6OJ2|1|QA|G|1068
*
6OJ2|1|QA|C|1107
6OJ2|1|QA|G|1108
6OJ2|1|QA|C|1109
6OJ2|1|QA|A|1110
6OJ2|1|QA|A|1111
6OJ2|1|QA|C|1112
6OJ2|1|QA|C|1113
*
6OJ2|1|QA|G|1187
6OJ2|1|QA|A|1188
6OJ2|1|QA|C|1189
6OJ2|1|QA|G|1190
6OJ2|1|QA|A|1191
6OJ2|1|QA|C|1192
6OJ2|1|QA|G|1193

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QB
30S ribosomal protein S2
Chain QC
30S ribosomal protein S3
Chain QE
30S ribosomal protein S5
Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QJ
30S ribosomal protein S10
Chain QN
30S ribosomal protein S14 type Z

Coloring options:


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