J3_6OJ2_041

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6OJ2|1|XA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_041 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1609

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6OJ2|1|XA|C|1237
6OJ2|1|XA|A|1238
6OJ2|1|XA|A|1239
6OJ2|1|XA|U|1240
6OJ2|1|XA|G|1241
*
6OJ2|1|XA|C|1296
6OJ2|1|XA|C|1297
6OJ2|1|XA|C|1298
6OJ2|1|XA|A|1299
6OJ2|1|XA|G|1300
6OJ2|1|XA|U|1301
6OJ2|1|XA|U|1302
6OJ2|1|XA|C|1303
*
6OJ2|1|XA|G|1334
6OJ2|1|XA|C|1335
6OJ2|1|XA|C|1336
6OJ2|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx